The colleges are home to a large collection of registered university clubs and organizations.

Bethune College

• Astronomy Club BC104
• Atmospheric Science Club BC114
• Bethune Athletic Committee (BAC) BC122
• Bethune College Council (BCC) BC122
• Biology Society (YUBS) Lumbers 111
• Biophysics Club BC104
• Canadian Association for Research in Regenerative Medicine (CARRM) BC114
• Canadian Immunology Research AssociationBC114
• Chemistry Society CB206
• Club Infinity N537 Ross
• Dragon Boat Club BC105
• Fencing at York BC113
• First Aid at YorkBC103B
• Frontier CollegeBC 113A
• Georgaphy  & Env Sci SocietyBC114
• Internationally Educated Professionals @ YorkUBC301
• Kendo Club BC113
• Lassonde Student Government BRG
• Let's Talk Science BC348
• Lions Archery Club BC113
• NATS-AID BC218D
• Neurology Research AssociationBC113A
• Not Just TouristsBC 103B
• Physics Society BC104
• Pre-Dental SocietyBC 114A
• Pre-Medical AssociationBC 113A
• Project Start! Science Canada114A
• Robotics SocietyBC321
• Science and Technology Studies Student AssociationBC301
• Science Student Caucus BC114A
• Student Ombuds Service (SOS) BC208
• WE CharityBC 113A
• Wildlife Society114A
• YAMA Anime and Magna Association BC113

Calumet College

• Calumet College Council 122 CC
• Student Association of Health Management Policy and Informatics (SAHMPI) 126 CC
• Undergraduate Psychology Students Association (UPSA) 126 CC
• Faculty of Health Student Caucus (FHSC) 126 CC
• Ukrainian Students' Club @ York 125 CC

Founders College

• African Students Association (ASA) FC 121A/D
• Assyrian Chaldean Syriac Student Union FC 121A/D
• Chinese Students' Assocation
• Council of Candians FC 121A/J
• Community of United Jamaicans (CUJAM)
• Entre Voices Literary Magazine Team
• Federation of Diplomatic Students at York University
• Feminist Action FC 121 A/E
• Filipino Student Association
• Hallyu Dongari
• Health and Society Student Association FC 121A/E
• International Development Association FC 121A/J
• International Students Association (ISAY)
• Iranian Human RIghts Society
• Linguistics Student Association at York
• Malayalee Students Association
• The New Democrats of York University (NDYU) FC 121 A/D
• Students for Canadian Studies FC121A/J
• Undergraduate History Students Association
• Undergraduate Sexuality Studies Association
• United for Parity
• Women Empowerment Club

McLaughlin College

• Aboriginal Students' Association
• Amnesty International
• Criminology Society 003MC
• Debating Society 338 StC
• Dignitas Youth @ York
• East African Students' Association 446StC
• Global Political Studies Students Association
• International Students Association 499D StC
• Iranian Students' Association 418 StC
• Labour Studies Students Association
• Law and Society Students Association
• MacMedia 004MC
• McLaughlin College Council 143MC
• McLaughlin College Sport and Recreation Council 143 MC
• Model NATO 145 MC
• Model United Nations 410 StC
• Oxfam 003MC
• Peace by Peace 002MC
• Pre-Law Society
• Public Policy &Administration Students' Association 145 MC
• Save The Children 002MC
• Shalom Salaam @ York
• Sociology Undergraduate Students' Association 003MC
• Tatham Hall Residence Council
• Undergraduate Political Science Council 145MC
• Urban Legal Planners
• War Child Canada 002MC

New College

• Atkinson Professional Accounting Association (APAA) 253 ATK
• Entrepreneurship Development Association (EDA) 319 SSC
• Human Resources Student Association (HRSA) 122B ATK
• Information Technology Student Association(ITSA) 140D TEL
• Marketing Student Association (NMSA) 140H ATK
• Now Leaders 140H ATK
• Undergraduate Disaster and Emergency Management (UDEM) 140J ATK

Stong College

• Student College Student Government 106A SC
• English Undergraduate Students Association
• Professional Writing Students Association
• York University Sport Administration Association

Vanier College

• Business and Society Club (BUSO) 101C VC
• Classical Studies Students' Association (CSSA) 101A VC
• Children's Studies Students Association 830A Ross
• Existere 101E VC
• Ferazoine Canadese Italianna (FCI) 101F VC
• Japanese International Students' Association 110 VC
• Martial Arts Club 202 VC
• Philosophia 101D VC
• York University Mature Students Organization 113B VC

Winters

• Ballroom Dancing Club
• Beard Appreciation Society
• CAP Collective
• Communication Studies Student Association
• Creative Arts Students Association (CASA)
• Digital Media Student Association
• Electronic Music Society WC013
• Faculty of Education Students' Association WC 116
• Film Students Association
• Golden Key International Honour Society (GKIHS)
• Hallyu Dongari
• Lions Competitive Swim Team
• Ministry of Magic (MM)
• Music Student Association
• Portuguese Association (YUPA) WC 002B
• Salsa Club WC 002B
• Students For York (S4Y)
• Theatre Student Association (T.S.A.)
• Urban Non-Violent Initiatives Through Youth (UNITY)
• Visual Arts Students' Association WC 330E
• WIBI
• Winters Community Art Club WC 002D
• Winters Free Press WC 004